Deliberate mistake: When the investigators are in the basement wine cellar, they turn on their flashlights to illuminate the pitch black area as they walk around. However there is a light source moving with the camera shining on them as they are casting a shadow behind them.
Other mistake: When Jane is setting up for his escape from prison, he captures a wild mouse. Then he presumably holds her in his hand for the whole time. I've handled mice, and when they're scared, they bite hard enough to take chunks out. There's no way a wild mouse would stay in human's fist that long without drawing blood. (00:31:50 - 00:33:10)
Factual error: The container for the dangerous biological material is marked "Biohazard Level 5." There is no level 5. According to CDC regulations Biohazardous materials are rated 1 through 4. Based on the description of the material in the episode, it would be required to be stored in a laboratory rated at Biosafety Level (BSL) 4. All BSL 4 labs require personnel to wear a fully enclosed, pressurized suit when inside the lab. (00:01:05)