Deliberate mistake: The young Amelia Pond (played by Caitlin Blackwood) has brown eyes, however her older self (played by Karen Gillan) has green eyes.

Doctor Who (2005)
1 deliberate mistake in season 5 - chronological order
The Impossible Planet (1) - S2-E11
Factual error: The Doctor (and the staff on the station) refer to the idea of a planet being in orbit around a black hole as 'impossible'. It is not. Gravity (and physics in general) works perfectly well outside of the event horizon. For all practical purposes - regarding orbiting around it - the black hole might as well be any other object, as long as it has an equal mass. (00:07:15 - 00:08:30)
The Day of the Doctor - S7-E16
Clara: Doctor, what's going on?
Eleventh Doctor: It's a... Uh... Timey wimey... Thing.
The Doctor: "Timey" what? "Timey wimey"?
Tenth Doctor: I... I have no idea where he picks that stuff up.
Rise of the Cybermen (1) - S2-E8
Trivia: Only eleven Cybermen costumes were built, but careful filming made it look as if there were more.
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Chosen answer: No, no information is avalible for the identity of the entity.
Repo_Man