Utopia (1) - S3-E11
Character mistake: When the Futurekind spy starts sabotaging the silo's systems, and Chantho notes that they're losing power, she says, "We're losing power-tho!" - forgetting the "Chan-" prefix that she starts anything she says with, in order to not swear by her species' standards. (00:27:00)

The Pyramid at the End of the World - S10-E8
Visible crew/equipment: Right before the TARDIS materializes in the lab at Agrofuel, there's an overhead shot of Erica at the desk, and the two green tape X marks on the floor behind her are visible, precisely where Douglas had collapsed and his white protective gear should be. Note there's an earlier overhead shot of the same area before the incident, when Erica brings Douglas the coffee, and those tape marks are not there. (00:32:50)
Continuity mistake: When Clara takes Rigsy's chronolock, in the closeup of the tattoo Clara's lifting her hair with her right hand and showing the tattoo with her left hand, but in the next front-facing shot her hands have switched, she's holding up her hair with her left hand and showing the tattoo with her right hand. (00:26:45)
Continuity mistake: At the beginning, Missy is using a knife to sharpen a stick to a point. Later in the scene, when she says to Clara that if they go rescue the Doctor, everything the Daleks can throw at them is between them and him, she lists only the stick among their assets. The knife is never seen or mentioned again after Missy was done with it. (00:04:18)
Factual error: The Koh-i-Noor, as depicted in this episode, looks absolutely nothing like the real diamond. The episode's gemstone is about the size of the palm of the Doctor's hand, and shaped in a stereotypical brilliant cut. The real Koh-i-Noor is much smaller and oval-shaped.
Factual error: The Viking village has tubs of electric eels in the boathouse, which prove instrumental to the plot as the power source of the makeshift electromagnet used to relieve several of the attacking aliens of their helmets. The problem is that the Vikings live somewhere in northern Europe, and this episode takes place in the 800s. Electric eels are native to the Amazon and Orinoco rivers of South America, which at this point in history no one in Europe knew existed.
Continuity mistake: After the Doctor is knocked unconscious, Clara uses the psychic circuitry to pilot the TARDIS to what turns out to be a moment in the Doctor's past, in the barn first seen in "The Day of the Doctor." The loft in the barn where the young First Doctor is sleeping in bed, however, was not present in the previous episode.
Suggested correction: These events take place thousands of years apart. Buildings (especially wooden ones) are likely to change in that time.
The barn appears three times, in "The Day of the Doctor", "Listen" and "Hell Bent." Its appearance in "The Day of the Doctor" is chronologically in-between its appearances in "Listen" and "Hell Bent." Both of the two latter episodes have the loft, but "The Day of the Doctor" doesn't. That's the mistake here.
Plot hole: The Doctor leaves Martha a recording with instructions for her for when he's human. However, the flashbacks to the incident that led to him using the Chameleon Arch don't leave enough - or any - time for him to have made the recording, presenting his decision to use the device as a spur-of-the-moment one that he immediately acts upon.
Suggested correction: He would have been planning the change to human for a while now, not just made it up on the fly. So he could have made a recording before the opening scene.
The episode makes it pretty clear that he and Martha got taken by surprise by the Family's attack. The Doctor also explicitly says, when he gets out the Chameleon Arch headset, that he never thought he'd use it. The flashbacks consistently present his decision to become human as one made as an urgent, in the moment one.

The Time of Angels (1) - S5-E4
Character mistake: When Amy says "Doesn't anybody need me?" from the door of the dropship, there's a misspelling on the door: "Trip Hazzard" instead of "Trip Hazard." (00:16:19)
Daleks in Manhattan (1) - S3-E4
Continuity mistake: When Diagoras enters the Daleks' lab, he is shown pulling on his right glove twice. (00:18:55)

Revealing mistake: In close-ups of the modified pig, seams are visible on its forelimbs. (00:22:45)
Visible crew/equipment: When Bill and Nardole run away at the end of the countdown, the reflection of the camera dolly and cameraman can be seen on the CERN countdown board. (00:35:55)
Continuity mistake: During the Doctor's class he draws lines on the chalkboard, which continually change shape between shots. (00:04:05 - 00:05:10)
Knock Knock - S10-E5
Continuity mistake: When Bill walks out of the TARDIS, her teddy bear is lying in the box she's carrying with its head to Bill's right. In the next shot from behind Bill as she sets the box down on the ground, the teddy is suddenly lying the opposite way. (00:06:45)
Other mistake: The Doctor says "These are a sort of mark 2, yeah?" The subtitles say "These are a sort of Mach 2, yeah?" (00:17:40)
Other mistake: O'Donnell imitates another character retching. The subtitles show this as (WRETCHES). (00:03:00)
Other mistake: Prentis says "In my ship, I have directions to my planet and a selection of items that you can oppress me with." The subtitles say "[...] appraise me with." (00:06:25)
Continuity mistake: The Doctor's hairstyle alternates from parted over the left side to a right side part and back while standing by the Pandorica. (00:27:40)
Continuity mistake: Throughout the episode, the collar of the Doctor's shirt frequently tucks in and out of his coat from shot to shot. Especially noticeable in the scenes where they are looking for and subsequently fix the Dalek's radiation leak.
Continuity mistake: In the scene where Rory pushes a Dalek backwards it has ear lights but in the next shot it doesn't.
Suggested correction: The close-up shot of the Dalek just as Rory pushes it is positioned such that the ear lights, and the place where they're mounted, isn't visible anyway.