Factual error: When you see Ned Flanders put the earth back inside the hole, he puts it back in much faster than is possible. In one shot, he is only just starting to put it back in, then you see Bart who talks to himself for a few seconds, then back to Flanders, who has finished burying what is later to be revealed as the plant that he (Ned) drowned.
Continuity mistake: Homer's two hairs over his head are dishevelled when the family arrive at Itchy and Scratchy land due to whatever has happened on the detour - however, it suddenly changes to being like he normally has it in the last frame that shows the family in the car, before the car park is shown.
Continuity mistake: In 'The Shinning,' Homer is chasing his family with an axe. They are hiding behind a curtain, and then they run outside, away from Homer, opening only one of the double doors. In the following overhead shot of them running through the snow, both doors are now open. (00:07:30)
Continuity mistake: In 'Time and Punishment,' the blue button on the toaster occasionally differs from being at the bottom of the lever to suddenly at the top, visible in the first shots of Homer fixing the toaster and between shots after Homer sits on the pink fish. (00:09:25 - 00:12:45)
Continuity mistake: In 'Time and Punishment,' Homer goes back in time, then returns, and the kitchen table has plates of food, cutlery and glasses all set out. Then when Homer is informed that Ned is the Lord of the Universe, the house starts shaking, but you can see the table is now totally clear. (00:11:15)
Continuity mistake: In 'Time and Punishment,' when Homer exits the basement, he discovers Bart and Lisa are giants, and he then screams and runs back to the "basement" - however the same door that leads to the basement seconds ago, now leads to a green -carpeted room, and the basement seems to have vanished. The door is also hinged on the wrong side. (00:12:50)