Continuity mistake: While Lisa is standing in front of the table with her friends in the cafeteria, we see that the trays appear during the first shot, then after the camera zooms in on Lisa's table, the trays disappear. Then during the third shot, Lisa calls Alex over to her table. Look at the table again: the trays have reappeared. (00:06:00)
Continuity mistake: After Lisa wakes from her daydream, there's a boy behind her with blonde hair and a light purple shirt. After Ms. Hoover says "Then come back and finish the test", the boy's hair turns blue, and after it zooms in on Lisa's face, there's a boy with brown hair and a blue shirt behind her.
Revealing mistake: At court, as Homer is walking towards Alec Baldwin, Kim Basinger and Ron Howard, Bart is in the background sitting with the rest of the Simpsons, but his head is missing from his body. His head then reappears back on his body after about 2 seconds.
Continuity mistake: When Homer is shot at the hippie farm, he ends up with a flower in his head, stem first. But he put the flower in the gun barrel stem first, as well. From a shot at that close a range and that velocity, there's no way the flower could have turned around in mid-air.