Audio problem: When Jen is talking to Jack at the Helpline Office, she jokingly tells him that he is too young to be likely to "haunt them with your sad, single self." She appears to fumble her dialogue, however, and you can hear her almost switch the words around and say "single, sad self." She catches herself, and says 'sad' first instead. (00:35:50)
Plot hole: Dawson is in his bedroom, and hears a noise outside his window. He panics, and picks up his laptop to use as a 'weapon' if necessary, while approaching the window. This doesn't seem logical; because for one thing he knows Joey is in town and she has been coming in through that window for years, and wouldn't he think of that first? Also-highly unlikely Dawson would actually use a very expensive Apple laptop as a weapon when it could be damaged, and he relies on it extensively for his work as a Writer/Producer. (00:30:55)
Continuity mistake: When Jack is pulled over near the start the creek behind him is empty, and remains like that throughout the scene. Then for the last few shots before he drives off again a sailboat has appeared in the background, literally out of nowhere. (00:06:45)
Visible crew/equipment: It's morning at Jen's and Grams'. Jen is seated at the kitchen table downstage/far left. Grams is upstage/right at the stove scrambling eggs. Grams crosses downstage to put the eggs in front of Jen and the mic overhead upstage/right peeks out just a tiny bit. Grams crosses back to the stove. Suddenly the microphone - including the rod the mic is on - just drops down almost completely into the frame over Grams' head and is not pulled back up.
Revealing mistake: When Jen and Jack are having coffee at the coffee shop, Jen walks outside and turns to bang on the outside window of the store to get Jack's attention. When she hits the window, you can tell it isn't a real window made of glass. It's obviously some sort of plastic, as it flexes too easily and moves too much to be a real store window. This was probably done to make the window safer for the actors during this scene.
Continuity mistake: When Dawson is coming down the stairs to talk to his parents in the living room, there is a shot of Gail and Mitch on the couch together. Gail is sitting in such a way that her legs are draped over Mitch's legs, and her right leg is specifically hanging over his right leg touching it. But in the next shot, they show Gail and Mitch from the other side of the couch; and suddenly she is sitting with her legs up, bent at the knees and Mitch has his right leg up. There wasn't enough time between shots for anyone to move.
Plot hole: When Dawson, Joey, Jen and Pacey are stuck on Witch Island after dark-they are suddenly shown using strong flashlights to see their way. But they had never originally intended to be on Witch Island after dark, which was made clear when someone suggested leaving because 'it was starting to get dark'. They were only carrying light daypacks for their day trip, and Pacey even joked about how no-one had bothered packing any snacks. Therefore since no-one intended to be on the Island after dark, and they packed very light day packs without even food, why would they suddenly be carrying large flashlights? It's unlikely they would have bought them at the Witch Island Gift Store, as it wasn't shown and no-one seemed to pay for anything from there.
Revealing mistake: When Grams is in the Kitchen with Jen and Jack, her sweater isn't buttoned right. When she walks close to the table you can see that the bottom edges of the front of the sweater don't match. It appears to be about one button off-one side is higher than the other. (00:26:35)
Other mistake: In the scene where Pacey and his Boss are out to lunch, his boss states that he just bought a car, so they head to a dealership. When they are walking in, his boss goes to a car that's kept in the showroom and dusts it off with a cloth as though that's the one he bought, since it is unlikely that he'd clean off a car that wasn't his. A car that someone just bought would not be kept in a showroom; it would be on the lot and ready to go, especially if the paperwork was already completed, as the boss stated when he said it was already signed and paid for.
Continuity mistake: After Joey finds the visitor Anderson playing a violin on his yacht, they have a back and forth conversation where she hides her work apron behind her back. When the camera angle switches back and forth, her arms are in different positions. (00:14:10)
Other mistake: After Dawson and Jen order "cokes" from Joey at the seaside restaurant, Joey pours their drinks into plastic red cups. She only pours several milliliters of cola into the cups, barely enough for one gulp. (00:29:50)
Revealing mistake: In the first scene, Pacey says something like see I think we should probably drop anchor here, have a bite to eat (and other things)... As he's walking around the boat, the camera shifts over and you can see two ropes that indicate the boat is already anchored or docked to something.
Continuity mistake: When Andie and Jack are discussing Ethan's visit while sitting outside eating breakfast, Andie pours milk over her cereal, puts down the milk, takes her spoon in her right hand, then into her left hand. The immediate next camera angle shows Andie holding the milk again, closing it and putting it down, again. (00:06:22)
Character mistake: In the scene when Dr. Drew has Joey and Eddie on stage, they are arguing and Joey says that Eddie moved away and dumped her twice. Actually, he only dumped her once, when he moved out of his apartment and back home with his parents. The 2nd time that Joey is referring to is when Eddie moved to California for the writing workshop, which SHE helped and encouraged him to do. So he did not dump her 2 times; she basically pushed for him to leave the 2nd time, yet she acts as though this situation never occurred.
Audio problem: During the scene where the group (including Mr Fricke) are all having breakfast together, Pacey says 'this is for you, Mr Fricke' and hands the B&B critic a plate. A few moments later, when Joey is in the kitchen area talking to Bessie (away from the group in the dining area), the exact same dialogue can be heard from Pacey as background noise to Joey and Bessie's conversation. The laughter and general chatter is also the same, showing that the entire audio was lifted from the breakfast table scene and placed over the kitchen conversation scene.