Continuity mistake: When Ash requests a baker, the basket further away from the screen has its left strap facing diagonally up, but in the next shot, it is facing vertically. (00:03:45)
The Battling Eevee Brothers - S1-E38
Continuity mistake: When Sparky asks, "Have you decided on Eevee's Evolution yet?" Misty's left thumb is on the front of the bench, but in the next shot, it is not. Also, there is a drink on the right support of the bench, but in the next shot, it is on its beams. (00:10:16)
Evolution! That Mystery and Wonder!! - S8-E50
Continuity mistake: When part of the radio tower begins collapsing, Caterpie mistakenly has five feet instead of four. Also, the part Caterpie is on is bent, but in the next shot, it is straight. (00:10:50)
The Battling Eevee Brothers - S1-E38
Continuity mistake: When Ash and friends turn to Pikachu after he notices something, Ash's right sleeve goes from not covering the right strap of his bag to covering it. (00:01:17)
Continuity mistake: After Brock places a sticker on a rock, the rock's cracks change between shots. (00:02:46)
Continuity mistake: When Ash asks how they would succeed in their match at the Saffron City Gym if they do not go back into the Pokémon Tower, Charmander is on a connecting part of the path, but in the next shot, he is not. Also, Pikachu is on one completely, but in the next shot, he is not. (00:10:31)
Haunter Versus Kadabra - S1-E24
Continuity mistake: When the camera pans across Ash and friends as they look at the Saffron City Gym, Ash is smiling, but in the next shot, he is not. (00:02:53)
Charmander: The Stray Pokemon - S1-E11
Continuity mistake: When Ash and friends realise that the Charmander on the rock is Damian's, Brock's vest goes from being visible underneath Misty's right arm to not and then back to being visible. Also, the marks on Ash's cheeks go from being forward z's to being backward ones. (00:06:43)
Battle Aboard the St. Anne - S1-E15
Continuity mistake: When a passenger asks the captain if the ship is a little off-course, a crowd surrounds a hallway, but in the next shot, the hallway disappears. (00:18:39)
Battle Aboard the St. Anne - S1-E15
Continuity mistake: When Meowth says, "We got a call from the boss," he moves his right forepaw onto a button, but in the next shot, it is no longer on it. (00:04:24)
Continuity mistake: When Ash says, "We gotta make sure we don"t get separated," Misty's right arm is violet, but in the next shot, it is skin colour. (00:01:32)

Mystery at the Lighthouse - S1-E13
Continuity mistake: When the lights in the lighthouse turn on, Pikachu's left ear overlaps Brock's bag despite being behind it. Also, the part of Ash's jacket to the right of his collar goes from white to blue. Additionally, the part of Brock's bag to the left of his head goes from present to absent twice. Furthermore, the keys on the phone go from present to disappearing. Moreover, the right side of the front of Ash's hat goes from being white to being white and red and then back to white. (00:10:08)
Mystery at the Lighthouse - S1-E13
Continuity mistake: When Ash and Krabby first approach each other, there is no stick on the ground, but in the next shot, there is. (00:04:26)

Charmander: The Stray Pokemon - S1-E11
Continuity mistake: When Damian says that he had a Charmander, his glasses go from being positioned towards the top of the hair underneath the bridge on it to being towards the bottom of it. Also, he goes from smiling to not smiling. (00:06:23)

Mystery at the Lighthouse - S1-E13
Continuity mistake: When Bill removes a device from his pocket, the top of the device is entirely orange, but in the next shot, it is mostly black with its band being orange. (00:15:31)
So Near, Yet So Farfetch'd - S1-E47
Continuity mistake: When Team Rocket takes off in the boat, it sinks. Their pokeballs float away, and Jessie says "Arbok and Lickitung are floating away!" But she doesn't catch Lickitung until Princess Versus Princess (Season 1, Episode 52).
Suggested correction: It's because these episodes were aired out of order.
Pokemon, I Choose You! - S1-E1
Continuity mistake: When the capsule containing the three pokeballs first opens up, you can see the names of the Pokemon etched into the balls (in Japanese). But when Ash picks them up, the names are gone.

Flower Power - S3-E6
Continuity mistake: When the person giving flyers says, "It's a giant outdoor Pokémon entertainment festival!" there is a man in the background with a blue shirt, but in the next shot, he has a yellow one. (00:01:58)
Continuity mistake: Jessie seems completely surprised when she's told that Voltorb can explode, but in The Ninja-Pokemon Showdown (Season 1, Episode 32), not only did she and the others find out what Voltorb are, they were all affected by the explosions as well.
Continuity mistake: In both "Attack of the Prehistoric Pokémon" and "Charizard Chills" Charizard carries Ash on its back without any trouble. However, later on in "Charizard's Burning Ambitions", Ash is suddenly too heavy for Charizard to carry.