Continuity mistake: When Sparky asks, "Have you decided on Eevee's Evolution yet?" Misty's left thumb is on the front of the bench, but in the next shot, it is not. Also, there is a drink on the right support of the bench, but in the next shot, it is on its beams. (00:10:16)
Continuity mistake: When Ash asks how they would succeed in their match at the Saffron City Gym if they do not go back into the Pokémon Tower, Charmander is on a connecting part of the path, but in the next shot, he is not. Also, Pikachu is on one completely, but in the next shot, he is not. (00:10:31)
Continuity mistake: When Ash and friends realise that the Charmander on the rock is Damian's, Brock's vest goes from being visible underneath Misty's right arm to not and then back to being visible. Also, the marks on Ash's cheeks go from being forward z's to being backward ones. (00:06:43)
Continuity mistake: When the lights in the lighthouse turn on, Pikachu's left ear overlaps Brock's bag despite being behind it. Also, the part of Ash's jacket to the right of his collar goes from white to blue. Additionally, the part of Brock's bag to the left of his head goes from present to absent twice. Furthermore, the keys on the phone go from present to disappearing. Moreover, the right side of the front of Ash's hat goes from being white to being white and red and then back to white. (00:10:08)
Continuity mistake: When Team Rocket takes off in the boat, it sinks. Their pokeballs float away, and Jessie says "Arbok and Lickitung are floating away!" But she doesn't catch Lickitung until Princess Versus Princess (Season 1, Episode 52).