Corrected entry: When Neo just enters the apartment room and is shot by Smith, the next shot is when Smith fires the Deagle, but the camera is an overhead shot. You see the casing get ejected straight up into the air. This is not possible as the Deagle and other pistols eject the spent casing upwards and slightly to the right over the user's shoulder.
Corrected entry: In the middle of the film when we see Cypher talking to Trinity on the phone, at the end of their conversation we see Tank with the big electric gun, when he fires it, pause and use frame by frame or slow motion and you can see its not Cypher (Joe Pantoliano) but his stunt double, this can be seen because the brightness of the gun causes his face to be bright so you can see the stunt double. (01:26:55)
Corrected entry: To exit the Matrix the character must find a secure phone line with which do so, we see this in the subway when Trinity lifts the receiver and places it to her ear and then zips down the phone. However surely to enter the Matrix the same must be true, so who or how is the receiver on the phone lifted in the Matrix for them to enter?
Corrected entry: When Neo is on the rooftop, and the helicopter is crashing, he winds the rope around his arm and as the helicopter goes down, it drags him to the edge of the building which is surrounded by blocks of some kind. Notice, when he hits the blocks, the block under his right foot wobbles showing it's not real.
Corrected entry: When Morpheus is showing Neo the construct for the first time they're walking down the street beside a construction site with green cloth covering scaffolding surrounding the building. They walk past an uncovered part that has an ATM and the bank logo is a yellow diamond with the bottom-right part being black. This is the logo for the Commonwealth Bank of Australia, nowhere near the USA that the events are supposed to be taking place in.
Corrected entry: Cypher alerts the agents to the location of Morpheus' base of operations via cell phone tracing. But since the agents can transport to any body in the Matrix that hasn't been unhooked, and they can trace calls in about 30 seconds as we saw at the start, it would have been easier if they had transported to the nearest bodies, got into the building, killed Mouse, destroyed their equipment and then summon the police. All this they could have done in 5 minutes while everyone was at the Oracle, but instead we get a very long, action packed confrontation.
Corrected entry: Tank explains to Neo and Trinity that the reason the agents took Morpheus is because all captains to the ships are given codes to access Zion's mainframe and if an agent gets into the system it could destroy them. In the Matrix: Reloaded though, the Architect tells Neo "This is the sixth time we have destroyed it and we have become quite exceeding at it." Talking about Zion. If the machines have successfully destroyed it in the past six times, why would the agents need to even get into the computer to destroy them when they would just do it later?
Corrected entry: After the Agents ram the phone booth and brick wall, the truck reverses out. A brick is visible on the engine. A few shots later, the brick's mysteriously disappeared.
Corrected entry: In the beginning after Neo wakes up next to his computer, and the Guy knocks on his door, when Neo answers the door, a chain is hooked across it. After he gets the money from the guy, he shuts the door and goes to get the disk from inside the book, then goes to back to the door to give it to the guy. He opens the door and the chain is not hooked anymore. You don't hear him take the chain off the door before he opened it, and he didn't take the chain off after he shut it, either.
Corrected entry: Morpheus is tortured, drugged, and shot in the leg. Then he's rescued by Neo dangling from a helicopter and dropped onto a rooftop. After Neo pulls up Trinity from the falling helicopter, the talking scene at the end of all of this has Morpheus reminding Neo that "he IS the one". I know this is picky, but Morpheus is very alert, chipper, and looking way to good after having been tortured, drugged, and shot in the leg just moments ago.
Corrected entry: At the beginning of the film when Trinity sees the telephone box, there is a large lamp-post that she runs past, yet when you slow it down, she's in line with the post not in front of it from the previous shot, also if you pause it or slow it down, you can actually see that the path she just run down has shortened somewhat. (00:05:10)
Corrected entry: At the very beginning of the film when we see Trinity kick the chair at a cop, it knocks him back a bit and the chair falls to the ground, yet when the scene cuts to a different cop who is just about to fire upon Trinity if you pause or slow it down you can again see the chair flipping over and heading towards this second cop. (00:03:00)