Continuity mistake: When the red Ford Bronco is driven off the ferry (ignoring all the impossible factors required for it to successfully do so), it flips through the air and contacts the water going backwards, its right/rear tail light entering the water first. The closer next shot shows the truck sink somewhat as it continues to flip backward, onto its roof. The very next shot shows the interior of the truck as it enters the water right-side up and going forward as water rushes in. Denzel lurches forward and down, driving his face into the water that is about waist level. The next exterior shot is underwater as the truck now lands in the water, nose first and right-side up. It then begins the expected slow dive, nose-first. (01:52:30)
Continuity mistake: In the scene where Superman is trying to prevent the plane from crashing he is holding the nose of the plane and bits of it start to crumble in and fall apart or away. Once the plane is safely on the ground within the ballpark the scene shows the plane from the side where there is no damage to the nose. (00:40:15)
Continuity mistake: Near the end of the film, Violet infiltrates the complex and makes her way into a white room with tons of men in white suits. She starts fighting them and when a couple of guys come at her, she moves quickly and one guy stabs the other in the chest. When she goes to elbow one of the guys in the face, watch his helmet, it comes flying off, revealing his head and hair. When the camera quickly changes to another angle, his helmet is on perfectly straight. (01:17:45)
Continuity mistake: After the fight on the barge between Michael and Marcus, Selene tries to revive the impaled and seemingly dead Michael. At one point she rips his shirt open to pour her own blood into his wound, then the shot changes to her face, then changes again, slightly further out. It is in this shot, you can see Michael's shirt is still intact.
Continuity mistake: In the scene where John is talking to Van Buren underneath the bar, John has a large spot on his neck, as well as a scab and red mark on his chin. These aren't present at another point in the film. (01:05:25)
Other mistake: When Bruce and Mos Def are running through the alley near the beginning, they run past a Chinese man who slams a dumpster lid shut. Once Bruce pulls out his gun to look back, that same man starts running because he gets scared. In the next shot, he continues running, but soon stops as if he thinks filming is over. This is visible right before the camera pans to the right.