Visible crew/equipment: In the scene where Prue comes home and finds Andy inside the manor. There is a shot where if you look behind Andy's shoulder you can see half of the body of the director in the background in the observatory room sitting in a director's chair. (00:16:00)
Continuity mistake: The gang investigates the trail of limestone to a manhole in the middle of the street, with nothing around it. But when Daphne is putting on her "Wallowing galoshes" boots, somehow a small brick wall just materializes in the middle of the street for her to sit on - and then vanishes a couple shots later. Not just the fact that it appears and vanishes between shots, but that there is a random brick wall in the middle of the road. (00:05:10)
Continuity mistake: After Candy and the stunt man quit the movie, Mr. Maxwell says he has to withdraw his job offer to the gang as it's too dangerous. As the gang is shown, Scooby is sitting in front of Shaggy and Fred. It cuts to a close up of him as he gets excited about this, and suddenly Fred and Shaggy have vanished. (00:06:10)
Continuity mistake: In the opening scene when John is going to the refrigerator, a white skull can be seen on the left side of the kitchen table amongst all Sherlock's science equipment. When he closes the refrigerator door again after discovering the severed head, the skull has disappeared. As he's leaving the kitchen, the skull reappears. (00:03:25)
Revealing mistake: When Tony is telling Gibbs & Ducky that Abby got a hit on the dead sailor's fingerprints, Gibbs takes the file from Tony; the camera shows the file, which appears to be a legitimate profile sheet, but in the comments section, is the script that Tony just read aloud. (00:07:36)
Continuity mistake: After the drive-by shooting at the Federal Building, when Owen and Sam escort the defector and his girlfriend into the sedan, the license plate number is "5GOI417" which soon changes to "5PCI294" when Sam drives backwards. Then it changes back to "5GOI417" when Owen and Sam leave the car, and yet it's "5PCI294" again when Owen points his gun at the camera.
Character mistake: When Mac, Stella, and Danny are trying to determine where the fired bullet entered the train car, none of them are wearing rubber gloves. But even though they're not handling any evidence, they're still processing a crime scene. (00:05:00)