Audio problem: In the 'PC Pan-Am Gives Evidence' sequence (part of Series 3, Show 1), there is a loud, off-camera crash at 16'15", followed by hysterical audience laughter and a Palin visibly trying to stifle a laugh. This is because the heavily-bandaged 'Njorl', who had been replaced at that point by a dummy (enabling his head to be removed in the next scene), fell backwards off the podium, and had to be re-positioned by the crew. Filming presumably stopped, as a cutaway of Njorl appears in the middle of Pan-Am's address. The edit is also very audible, as Palin's speech suddenly plummets in volume.
Audio problem: In the final song, "This is What It's Like to Be Lovers", the lead male studio singer starts the song, not David Cassidy, then they switch to David Cassidy's real voice halfway through for just two lines, then they switch back to the male voice of the studio singer.