Plot hole: At the start of the movie, a great deal is made of the boom mic that enters the shot. This is ridiculous, because Bolt's view would not be restricted to what was onscreen, he'd have a perfect view of the person holding the boom mic (as evidenced by it not being stable). There's no possibility of him not seeing the person holding the mic either. As Bolt completely and utterly believes the world he lives in, and thinks the situations he finds himself in (saving Penny) are real, someone holding a boom mic would break the illusion for him. In all instances in the movie where an outside force (i.e. a dog handler) interacts with him, Bolt never gets to see the person handling him (handler approaches from behind), the boom mic operator however is literally right in front of him.
Suggested correction: He wasn't paying attention and considering that his focus was only on the "action", how the hell would he notice a boom mic when he's trying to protect Penny? His "reality" is never broken even AFTER he's in his trailer.
Plot hole: The idea that Marlow would simply take a taxi to his wife's address after being missing in action for thirty odd years is stupid beyond belief. He was on a ship sailing from the central Pacific for days and those ships have radios! The US military would have known he was coming. Someone, somewhere would have notified the authorities that a US serviceman long thought dead was actually alive and on his way home and his wife and son would have been there on the docks to greet him, not standing slack-jawed in the kitchen dropping trays of drinks on the floor when he turned up! What would have happened if she had remarried? Or moved house? Or she was dead? Don't tell me the US military didn't know he was coming - he is wearing a brand new uniform, clean and pressed.
Suggested correction: The implication is that Marlow went through an extensive debrief and nobody had contacted his family until the debrief had concluded, based on the top secret nature of the mission. As you say, the fact he has a brand new uniform suggests that he has contacted the US Military prior to ever contacting his family. The fact that his wife would have moved and re-married is irrelevant, he still would have made an attempt to contact her so he could see his son.
And they wouldn't have contacted her after the debrief had been completed? What utter nonsense. Allowing him to just turn up on the doorstep without notifying his wife first is an utterly irresponsible and even dangerous act. She could have fainted with shock or even had a heart attack. She would absolutely, definitely, 100% carved in stone, been advised of her husband's survival and return.
Since we know very little about the completely fictional organization Monarch, we obviously cannot say they would "carved in stone" do anything. In order to be a mistake in the movie, it would have to be something that is impossible. A secret government organization that doesn't even exist in real life not behaving the way the real military would is not impossible. At least not by the rules set forth in the film. It's perhaps improbable but it is most certainly not impossible.
It is an inviolable, carved in stone, fur lined, ocean going, top of the list rule that the next of kin are immediately advised of the change of status of military personnel. MIA, now confirmed dead? They'd be the first to know. MIA, now confirmed to be alive, same outcome. His wife would know he was on that ship coming home.
This is true in real life but in the fictional world of the movie Monarch is a secret, government agency that has some degree of control over the military. You can't apply the same rules as in real life in this situation.
Plot hole: The whole problem with the teleporter occurs when fly DNA is mixed in with Seth Brundle's DNA, starting his transformation into the Brundlefly. Brundle is on a hiding to nothing from the word go, and the fly is irrelevant. Humans are a walking talking mass of foreign DNA - we are host to one trillion bacteria all of which has a complete complement of DNA, as do various tiny mites that live in our hair follicles and all sorts of single cell organisms in our gut. If the transporter serves to mix the DNA of all living creatures which are in the transporter pod at the time Brundle would turn into a half-man, half-bacteria. Incidentally, DNA from a bacteria, an amoeba or a hair follicle mite would be just as 'compatible' with human DNA as that from an insect. It's quite a simple chemical, really.
Suggested correction: Being as how the bacteria and mites and such were IN or ON Seth, the machine was able to organize those symbiotic relationships accordingly as teleporting one would teleport all. The fly was separate, not touching. The machine was not programmed to anticipate two separated entities and so combined them into one on the other side.
We leave behind a vapour trail of bacteria and viruses (among other things) as we walk, in our breath and emanations from pores in our skin, and Brundle isn't trapping any in his clothes as he isn't wearing any. Brundle has an invisible cloud of DNA floating around him in that teleportation chamber and as far as the machine is concerned their DNA has exactly the same status as that of the fly.
We don't know enough about how the machine works to determine how it might differentiate different DNA types. Unexplained science means it's somehow able to do it. Willing suspension of disbelief for the win.
Plot hole: Anubis Warriors can only be killed by being beheaded. But during the final battle, you see several are killed by simply being stabbed.
Plot hole: When Amidala and some of the clone troopers get blown out of the ship chasing Dooku, later the trooper approaches Amidala and asks about making their way back to the front lines, but Amidala says they should go to the hangar to help Obi-Wan and Anakin. How did she know about the hangar, having left the ship quite some time before it arrived at the final destination? (02:05:50)
Plot hole: There are six metal bars mounted around the circumference of the water wheel's axle. In the wheel's interior, when Jack frees himself he lands on his feet, begins to run and promptly hits his head on one of those mounted axle bars, then falls out. Moments later, when Jack returns and runs in the wheel, he is shorter (way more than a foot) than all six of the mounted axle bars spinning with the water wheel, which would make that previous shot impossible, however humorous it is. (01:52:40 - 01:53:55)
Plot hole: Peter goes into Carl's mind to save Catherine. When he's in there he sees the tank with the water nymph. On the tank are strange symbols which provide the FBI with the clue needed to find the latest victim. Makes sense so far. But, go back to the scene just after the FBI have captured the comatose killer and are looking in his basement. The FBI are looking at the contraption that the killer uses to suspend himself over the victim. On the contraption is the same symbol seen later on the water nymph's tank. Why didn't the FBI follow up the symbol then?
Plot hole: When Bridgette ran through the glass and Linda and Jim were at the hospital Jim tells Linda he called her mom and told her what happened and she was coming to stay over the next day. Yet apparently her mom forgot what happened because she had her committed because Linda didn't remember what happened to Bridgette's face. Also, Bridgette was like 9. How come no-one just asked her what happened?
Plot hole: When Vlad enters Mehmed's tent, the entire floor is covered in silver coins and Mehmed remarks on Vlad's weakness to it. There's no way that Mehmed could have known about Vlad being a vampire or about his weakness to silver, as Vlad had killed every Turk after becoming a vampire, so nobody would be alive to tell him. Even the Turk found on the battlefield in the morning lived long enough only to deliver Vlad's message, but died immediately after that.
Plot hole: When Charlotte kissed Naveen at the end, she should've turned into a frog as well because she was no longer a princess.
Suggested correction: When ordinary people kiss a frog, they don't transform into anything. (Perhaps they die from infection after a few days.) Charlotte was just an ordinary person. Tiana was chosen. She wished upon the star. Naveen and the consequences of kissing Naveen were a result of Tiana's wish.
Suggested correction: How? She was no longer a princess.
Tiana turned into a frog because she kissed Naveen without being a princess, so Charlotte should have, too.
Tiana broke the talisman that the voodoo man had, thus breaking any more frog-turning spell. I know Mama Odie said that Naveen and Tiana broke the spell when they got married, but Dr. Facilier was still responsible for the spell in the first place, and he died, so there's that.
Plot hole: After Max and Allison rescue Dani from the witches, Max is driving his parents' car. Winifred flies up along side of them and asks Max to show her his driver's permit. How would she know about driving permits, since she's been dead for 300 years?
Suggested correction: There is a lot the movie doesn't show us about who they've passed and what they heard all evening. One example being we don't know everything the bus driver said to them. It's perfectly reasonable they heard somebody make reference to a driver's permit and the movie did not show us this conversation deeming it invalid to the plot.
Not referring to a learner's permit. She would have known what it means. She's emulating a cop pulling him over. She would have to know what that means...and know the difference between a license and a learners permit. Enough to find it funny and relevant to the situation.
Plot hole: At the end of the film, we see Edward carving ice sculptures in his mansion. How did he get the ice up there? First of all, it takes place in a warm climate and I didn't see a freezer up there in the castle. He couldn't have gotten ice from town because firstly he had scissors for hands and couldn't have gripped the ice. And, even if by some miracle he could, he wouldn't be able to buy any from town because everyone in town but Kim was convinced that Edward was dead, she told everyone that they killed each other. And Kim didn't bring it to him because she told her granddaughter in the end that she never saw him again after that night. So where did he get that ice?
Plot hole: During the scene where Merida gives her speech on "breaking tradition", her mother, as a bear, moves silently behind the majority of the crowd, so they don't see her. Fair enough. However, Merida and her father's clan are all looking in the same general direction (towards the crowd) while she's speaking - how does no one from Merida's clan see a bear moving at the back of the room?
Plot hole: After Superman has reversed time the Hoover Dam reverts to its previous undamaged state as it should, but Jimmy Olsen should then have been replaced back on the dam. Instead he interrupts the potential kiss between Lois and Superman and complains of being abandoned by Superman in the desert.
Suggested correction: Superman is moving at speeds fast enough to turn back time. He can spend 5 seconds to yank Jimmy away from the top of a dam he knows is going to be destroyed just to be safe in case he can't actually stop it all from happening again.
Plot hole: When Alex and Clear are sitting and having coffee they are on a corner. He looks in the window to see the bus pass, and as he looks to see if it is there, it's not. As the camera pans across the street, there is some construction going on which is blocking that whole road from being used, but then Terry, Carter's girlfriend gets "waxed" by the bus - no way it could have got through all that construction.
Plot hole: When Astrid gets on Toothless for the first time, Toothless takes off uncontrollably and tries to scare her. Hiccup seems to have no control over him at this time. How is that so if with the new tail fin, Toothless cannot fly without Hiccup's precise control of the tail fin? That whole sequence would have fallen apart. This mistake was even admitted to on the DVD commentary. (00:53:35)
Plot hole: One of Snape's memories show Lily telling baby Harry to be safe, be strong. That had to have occurred before Voldemort killed Lily. Snape was not in the house until after Lily was killed and Voldemort was gone. Only Lily and Harry should have had that memory, but not Snape.
Plot hole: So he needed the help of a big strong burly guy to flip the safe with the body, end over end to the pit, but he somehow was able to easily get it out of his basement and into the back of his car by himself?